Genome sequencing: a grin without a cat

In some types of unicellular algae, the chloroplasts have their own nucleus — a legacy of the time when the chloroplast was a free-living cell. The sequence of the genome in one such nucleus is now revealed.

First probable Australian cases of human infection with Rickettsia felis (cat-flea typhus)

Human infection with Rickettsia felis has been reported in most parts of the world, and R. felis has recently been confirmed in cat fleas in Western Australia. The clinical presentations of R. typhi and R. felis are similar, and in the past, the incidence of R. felis infection may have been underestimated. We describe the first reported cases of probable human R. felis infection in Australia. Two adults and three children in Victoria contracted a rickettsial disease after exposure to fleas from kittens. Molecular testing of fleas demonstrated the presence of R. felis but not R. typhi.

A new computerized adaptive test advancing the measurement of health-related quality of life (HRQoL) in children: the Kids-CAT

Purpose: Assessing health-related quality of life (HRQoL) via Computerized Adaptive Tests (CAT) provides greater measurement precision coupled with a lower test burden compared to conventional tests. Currently, there are no European pediatric HRQoL CATs available. This manuscript aims at describing the development of a HRQoL CAT for children and adolescents: the Kids-CAT, which was developed based on the established KIDSCREEN-27 HRQoL domain structure. Methods: The Kids-CAT was developed combining classical test theory and item response theory methods and using large archival data of European KIDSCREEN norm studies (n = 10,577–19,580). Methods were applied in line with the US PROMIS project. Item bank development included the investigation of unidimensionality, local independence, exploration of Differential Item Functioning (DIF), evaluation of Item Response Curves (IRCs), estimation and norming of item parameters as well as first CAT simulations. Results: The Kids-CAT was successfully built covering five item banks (with 26–46 items each) to measure physical well-being, psychological well-being, parent relations, social support and peers, and school well-being. The Kids-CAT item banks proved excellent psychometric properties: high content validity, unidimensionality, local independence, low DIF, and model conform IRCs. In CAT simulations, seven items were needed to achieve a measurement precision between.8 and.9 (reliability). It has a child-friendly design, is easy accessible online and gives immediate feedback reports of scores. Conclusions: The Kids-CAT has the potential to advance pediatric HRQoL measurement by making it less burdensome and enhancing the patient–doctor communication.

Erratum to: A new computerized adaptive test advancing the measurement of health-related quality of life (HRQoL) in children: the Kids-CAT

Abstract
Purpose
Assessing health-related quality of life (HRQoL) via Computerized Adaptive Tests (CAT) provides greater measurement precision coupled with a lower test burden compared to conventional tests. Currently, there are no European pediatric HRQoL CATs available. This manuscript aims at describing the development of a HRQoL CAT for children and adolescents: the Kids-CAT, which was developed based on the established KIDSCREEN-27 HRQoL domain structure.
Methods
The Kids-CAT was developed combining classical test theory and item response theory methods and using large archival data of European KIDSCREEN norm studies (n=10,577–19,580). Methods were applied in line with the US PROMIS project. Item bank development included the investigation of unidimensionality, local independence, exploration of Differential Item Functioning (DIF), evaluation of Item Response Curves (IRCs), estimation and norming of item parameters as well as first CAT simulations.
Results
The Kids-CAT was successfully built covering five item banks (with 26–46 items each) to measure physical well-being, psychological well-being, parent relations, social support and peers, and school well-being. The Kids-CAT item banks proved excellent psychometric properties: high content validity, unidimensionality, local independence, low DIF, and model conform IRCs. In CAT simulations, seven items were needed to achieve a measurement precision between .8 and .9 (reliability). It has a child-friendly design, is easy accessible online and gives immediate feedback reports of scores.
Conclusions
The Kids-CAT has the potential to advance pediatric HRQoL measurement by making it less burdensome and enhancing the patient–doctor communication.

Evaluating and predicting risk to a large reptile (Varanus varius) from feral cat baiting protocols

Control of introduced predators to mitigate biodiversity impacts is a pressing conservation challenge. Across Australia feral cats (Felis catus) are a major threat to terrestrial biodiversity. Currently feral cat control is hindered by the limited utility of existing predator baiting methods. Further proposed control methods include use of the novel poison para-aminopropiophenone (PAPP) which may present a hazard to some native animal populations. Here we used experimental and predictive approaches to evaluate feral cat bait take by a large native Australian predatory reptile the Lace monitor (Varanus varius). These lizards would be expected to readily detect, ingest and consume a lethal dose (depending on toxin) from surface-laid baits intended for feral cat control if a precautionary approach was not adopted when baiting. We modelled V. varius bait take using experimental and predictive biophysical modelling approaches to evaluate temporal effects of climate variables on V. varius activity and hence potential for bait removal. Finally we conducted a pre-PAPP baiting site occupancy assessment of V. varius within Wilson Promontory National Park (WPNP) to provide a basis for monitoring any longer term population effects of cat baiting. V. varius removed 7 % of deployed baits from 73 % of bait stations across another study area in Far Eastern Victoria. Daily bait removal was positively correlated with maximum temperature and solar radiation. Biophysical modelling for Far Eastern Victoria predicted that maximum temperatures <19.5 °C prevented V. varius activity and hence opportunity for bait removal. V. varius in WPNP was undetectable suggesting aerial baiting posed limited hazard to this species at this location. Depending how climate influences annual activity patterns and the specific poison, surface-laid baits could pose a significant mortality risk to V. varius. However, use of biophysical models to predict periods of V. varius inactivity may provide a novel means to reduce non-target bait take by this predator.

A continental-scale analysis of feral cat diet in Australia

Aim Reducing the impacts of feral cats (Felis catus) is a priority for conservation managers across the globe, and success in achieving this aim requires a detailed understanding of the species’ ecology across a broad spectrum of climatic and environmental conditions. We reviewed the diet of the feral cat across Australia and on Australian territorial islands, seeking to identify biogeographical patterns in dietary composition and diversity, and use the results to consider how feral cats may best be managed. Location Australia and its territorial islands. Methods Using 49 published and unpublished data sets, we modelled trophic diversity and the consumption of eight food groups against latitude, longitude, mean temperature, precipitation, environmental productivity and climate-habitat regions. Results We recorded 400 vertebrate species that feral cats feed on or kill in Australia, including 28 IUCN Red List species. We found evidence of continental- scale prey-switching from rabbits to small mammals, previously recorded only at the local scale. The consumption of arthropods, reptiles, rabbits, rodents and medium-sized native mammals varied with different combinations of latitude, longitude, mean annual precipitation, temperature and environmental productivity. The frequency of rodents and dasyurids in cats’ diets increased as rabbit consumption decreased. Main conclusions The feral cat is an opportunistic, generalist carnivore that consumes a diverse suite of vertebrate prey across Australia. It uses a facultative feeding strategy, feeding mainly on rabbits when they are available, but switching to other food groups when they are not. Control programmes aimed at culling rabbits could potentially decrease the availability of a preferred food source for cats and then lead to greater predation pressure on native mammals. The interplay between cat diet and prey species diversity at a continental scale is complex, and thus cat management is likely to be necessary and most effective at the local landscape level.

A game of cat-and-mouse: microhabitat influences rodent foraging in recently burnt but not long unburnt shrublands

We investigated the influence of vegetation structure and fire history on the foraging behavior of small rodents (Notomys mitchellii, Pseudomys hermannsburgensis, and Mus musculus) by conducting giving-up density (GUD) experiments in recently burnt (9–13 years since last fire) and long unburnt shrublands (> 40 years), and open and sheltered microhabitats, in a semiarid region of Western Australia. We predicted that rodents would spend less time foraging in recently burnt shrublands and open microhabitat and that the influence of microhabitat would be weaker in long unburnt compared to more recently burnt vegetation. Our findings show that fire history and microhabitat structure influence the foraging behavior of the study species and that the influence of microhabitat varies between fire histories. GUDs were higher in long unburnt vegetation and in open microhabitats. There was a microhabitat effect in recently burnt vegetation, but not in long unburnt. Rodents foraged more in sheltered microhabitats probably because predator encounters are less likely to occur there and it provides them with greater refuge from predation. The presence of a microhabitat effect in recently burnt, but not long unburnt vegetation suggests that understory vegetation density is more important in mediating predation risk than canopy density. Future studies of small mammal responses to land management actions should include behavioral, as well as population-level responses to differing fire regimes.

Draft national targets for feral cat management: towards the effective control of feral cats in Australia – targets with teeth

Feral cats have been present in Australia since soon after European settlement. They are now numerous and pervasive across the continent, and occur on many islands. Although they have been recognised as a Key Threatening Process to Australian biodiversity under the EPBC Act since 1999, and there has been a Threat Abatement Plan for them in place since 2008, there has to date been little progress towards their effective management.